In this article information is presented about system of certification of computer programs organized at Federal supervision body for nuclear and radiation safety “Rostechnadzor”. Special multidisciplinary Expert council is organized to provide this certification. This Expert council includes thematic sections for different types of analysis. Programs for analysis оf civil constructions are considered in section “Strength and reliability of constructions of buildings and structures”. Section provides expertise of programs including analysis of adequacy and accuracy of program in the claimed field of analysis. On the base of results of expertise the draft of certification passport of the program is prepared for the final analysis at Presidium of Expert council.